Example

Preprocessing was performed using the FSL suite (http://www.fmrib.ox.ac.uk/fsl/) (ver. 4.1.5). Brain extraction and motion correction were first performed for each of the functional runs. Functional images were then spatially smoothed using 5-mm full-width-half-maximum Gaussian kernel. For each functional run, registration was performed through a non-linear 3-step procedure implemented by FNIRT in FSL, whereby EPI images were first registered to slice-matched high-resolution T1 structural image, then to the high resolution MPRAGE structural image, and finally into 2 × 2 × 2-mm MNI standard space, using linear affine transformations by 12 parameters and non-linear displacement based on deformation fields. [cite]

Icons: Font-Brain (Glyphs: 31)

icon-voxel
liga:
icon-vecreg
liga:
icon-tbss
liga:
icon-T2
liga:
icon-T1
liga:
icon-spm
liga:
icon-smooth
liga:
icon-sagittal
liga:
icon-reslicing-inverse
liga:
icon-reslicing
liga:
icon-reslice
liga:
icon-registration
liga:
icon-qfdr
liga:
icon-probtrackx
liga:
icon-pfwer
liga:
icon-pbonf
liga:
icon-nifti
liga:
icon-nidm
liga:
icon-mprage
liga:
icon-motion
liga:
icon-mni
liga:
icon-mask
liga:
icon-glm
liga:
icon-fsl
liga:
icon-fnirt
liga:
icon-fmri
liga:
icon-fieldmap
liga:
icon-epi
liga:
icon-dtifit
liga:
icon-dti
liga:
icon-crosshair
liga:
icon-coronal
liga:
icon-concat
liga:
icon-cluster
liga:
icon-bet
liga:
icon-bedpostx
liga:
icon-axial
liga:
icon-mm
liga:
icon-mm2
liga:
icon-mm3
liga:
icon-mm4
liga:
icon-mm5
liga:
icon-mm6
liga:
icon-mm7
liga:
icon-mm8
liga:

Sizes

Transformations

Stanford Reproducibility Center