Index

A

abort() (freegenes.logger.message.FreeGenesMessage method)

addColor() (freegenes.logger.message.FreeGenesMessage method)

B

balloons_cursor() (freegenes.logger.spinner.Spinner static method)

bar() (in module freegenes.logger.progress)

C

changing_arrows() (freegenes.logger.spinner.Spinner static method) check_install() (in module freegenes.utils.terminal) Client (class in freegenes.main) convert2boolean() (in module freegenes.logger.message) create_author() (freegenes.main.Client method) create_collection() (freegenes.main.Client method) create_composite_part() (freegenes.main.Client method) create_container() (freegenes.main.Client method) create_distribution() (freegenes.main.Client method) create_entity() (freegenes.main.Client method) create_institution() (freegenes.main.Client method) create_module() (freegenes.main.Client method) create_operation() (freegenes.main.Client method)

create_order() (freegenes.main.Client method) create_organism() (freegenes.main.Client method) create_part() (freegenes.main.Client method) create_plan() (freegenes.main.Client method) create_plate() (freegenes.main.Client method) create_plateset() (freegenes.main.Client method) create_protocol() (freegenes.main.Client method) create_robot() (freegenes.main.Client method) create_sample() (freegenes.main.Client method) create_schema() (freegenes.main.Client method) create_tag() (freegenes.main.Client method) critical() (freegenes.logger.message.FreeGenesMessage method) custom() (freegenes.logger.message.FreeGenesMessage method)

D

debug() (freegenes.logger.message.FreeGenesMessage method) decodeUtf8String() (in module freegenes.logger.compatibility) delay (freegenes.logger.spinner.Spinner attribute) delete() (freegenes.main.Client method) delete_author() (freegenes.main.Client method) delete_collection() (freegenes.main.Client method) delete_composite_part() (freegenes.main.Client method) delete_container() (freegenes.main.Client method) delete_distribution() (freegenes.main.Client method) delete_entity() (freegenes.main.Client method) delete_institution() (freegenes.main.Client method) delete_module() (freegenes.main.Client method)

delete_operation() (freegenes.main.Client method) delete_order() (freegenes.main.Client method) delete_organism() (freegenes.main.Client method) delete_part() (freegenes.main.Client method) delete_plan() (freegenes.main.Client method) delete_plate() (freegenes.main.Client method) delete_plateset() (freegenes.main.Client method) delete_protocol() (freegenes.main.Client method) delete_robot() (freegenes.main.Client method) delete_sample() (freegenes.main.Client method) delete_schema() (freegenes.main.Client method) delete_tag() (freegenes.main.Client method) done() (freegenes.logger.progress.ProgressBar method)

E

emit() (freegenes.logger.message.FreeGenesMessage method) emitError() (freegenes.logger.message.FreeGenesMessage method)

emitOutput() (freegenes.logger.message.FreeGenesMessage method) error() (freegenes.logger.message.FreeGenesMessage method) exit() (freegenes.logger.message.FreeGenesMessage method)

F

format_time() (freegenes.logger.progress.ProgressBar method) freegenes (module) freegenes.client (module) freegenes.client.shell (module) freegenes.logger (module) freegenes.logger.compatibility (module) freegenes.logger.message (module) freegenes.logger.progress (module) freegenes.logger.spinner (module)

freegenes.main (module) freegenes.tests (module) freegenes.tests.test_client (module) freegenes.utils (module) freegenes.utils.convert (module) freegenes.utils.fileio (module) freegenes.utils.terminal (module) freegenes.version (module) FreeGenesMessage (class in freegenes.logger.message)

G

get() (freegenes.main.Client method) get_authors() (freegenes.main.Client method) get_collections() (freegenes.main.Client method) get_composite_parts() (freegenes.main.Client method) get_containers() (freegenes.main.Client method) get_distributions() (freegenes.main.Client method) get_entity() (freegenes.main.Client method) get_installdir() (in module freegenes.utils.terminal) get_institutions() (freegenes.main.Client method) get_logging_level() (in module freegenes.logger.message) get_logs() (freegenes.logger.message.FreeGenesMessage method) getmodules() (freegenes.main.Client method) get_operations() (freegenes.main.Client method)

get_orders() (freegenes.main.Client method) get_organisms() (freegenes.main.Client method) get_parser() (in module freegenes.client) get_parts() (freegenes.main.Client method) get_plans() (freegenes.main.Client method) get_plates() (freegenes.main.Client method) get_platesets() (freegenes.main.Client method) get_protocols() (freegenes.main.Client method) get_robots() (freegenes.main.Client method) get_samples() (freegenes.main.Client method) get_schemas() (freegenes.main.Client method) get_tags() (freegenes.main.Client method) get_user_color_preference() (in module freegenes.logger.message)

I

info() (freegenes.logger.message.FreeGenesMessage method) ipython() (in module freegenes.client.shell)

is_quiet() (freegenes.logger.message.FreeGenesMessage method) isEnabledFor() (freegenes.logger.message.FreeGenesMessage method)

L

log() (freegenes.logger.message.FreeGenesMessage method)

M

main() (in module freegenes.client) (in module freegenes.client.shell)

mkdir_p() (in module freegenes.utils.fileio)

N

newline() (freegenes.logger.message.FreeGenesMessage method)

P

patch() (freegenes.main.Client method) patch_author() (freegenes.main.Client method) patch_collection() (freegenes.main.Client method) patch_composite_part() (freegenes.main.Client method) patch_container() (freegenes.main.Client method) patch_distribution() (freegenes.main.Client method) patch_entity() (freegenes.main.Client method) patch_institution() (freegenes.main.Client method) patch_module() (freegenes.main.Client method) patch_operation() (freegenes.main.Client method) patch_order() (freegenes.main.Client method) patch_organism() (freegenes.main.Client method) patch_part() (freegenes.main.Client method)

patch_plan() (freegenes.main.Client method) patch_plate() (freegenes.main.Client method) patch_plateset() (freegenes.main.Client method) patch_protocol() (freegenes.main.Client method) patch_robot() (freegenes.main.Client method) patch_sample() (freegenes.main.Client method) patch_schema() (freegenes.main.Client method) patch_tag() (freegenes.main.Client method) post() (freegenes.main.Client method) println() (freegenes.logger.message.FreeGenesMessage method) ProgressBar (class in freegenes.logger.progress) put() (freegenes.main.Client method) python() (in module freegenes.client.shell)

R

read_file() (in module freegenes.utils.fileio) read_json() (in module freegenes.utils.fileio)

run() (freegenes.logger.spinner.Spinner method) run_bpython() (in module freegenes.client.shell) run_command() (in module freegenes.utils.terminal)

S

select_generator() (freegenes.logger.spinner.Spinner method) set_verbosity() (in module freegenes.client) show() (freegenes.logger.progress.ProgressBar method) show_progress() (freegenes.logger.message.FreeGenesMessage method) Spinner (class in freegenes.logger.spinner) spinner (freegenes.logger.message.FreeGenesMessage attribute)

spinning (freegenes.logger.spinner.Spinner attribute) spinning_cursor() (freegenes.logger.spinner.Spinner static method) start() (freegenes.logger.spinner.Spinner method) stop() (freegenes.logger.spinner.Spinner method) str2csv() (in module freegenes.utils.convert) stream_command() (in module freegenes.utils.terminal)

T

table() (freegenes.logger.message.FreeGenesMessage method)

test_endpoints() (in module freegenes.tests.test_client)

U

update_author() (freegenes.main.Client method) update_collection() (freegenes.main.Client method) update_composite_part() (freegenes.main.Client method) update_container() (freegenes.main.Client method) update_distribution() (freegenes.main.Client method) update_entity() (freegenes.main.Client method) update_institution() (freegenes.main.Client method) update_module() (freegenes.main.Client method) update_operation() (freegenes.main.Client method) update_order() (freegenes.main.Client method)

update_organism() (freegenes.main.Client method) update_part() (freegenes.main.Client method) update_plan() (freegenes.main.Client method) update_plate() (freegenes.main.Client method) update_plateset() (freegenes.main.Client method) update_protocol() (freegenes.main.Client method) update_robot() (freegenes.main.Client method) update_sample() (freegenes.main.Client method) update_schema() (freegenes.main.Client method) update_tag() (freegenes.main.Client method) useColor() (freegenes.logger.message.FreeGenesMessage method)

V

verbose() (freegenes.logger.message.FreeGenesMessage method) verbose1() (freegenes.logger.message.FreeGenesMessage method)

verbose2() (freegenes.logger.message.FreeGenesMessage method) verbose3() (freegenes.logger.message.FreeGenesMessage method) version() (in module freegenes.client)

W

warning() (freegenes.logger.message.FreeGenesMessage method) which() (in module freegenes.utils.terminal)

write() (freegenes.logger.message.FreeGenesMessage method) write_file() (in module freegenes.utils.fileio) write_json() (in module freegenes.utils.fileio)