wiki

SPM

Tutorials

• Cluster Pipeline Tutorial Includes instructions and examples for submitting matlab scripts (for SPM batch) in a cluster environment.
• SPM Quality Checks
• Installing SPM
• SPM Programming Intro

Pipelines

• SPM TIMESERIES Includes scripts for extracting groupmap “timeseries” (a bold value for each subject from a group SPM.mat)
• BOLD Processing Pipeline Includes instructions for manual processing and scripts for doing the equivalent on the BIAC Cluster.
• DTI Processing Pipeline Includes instructions for manual processing and scripts for doing the equivalent on the BIAC Cluster.
• VBM Processing Pipeline A few easy scripts for batch VBM analysis, currently available for DNS and FIGS
• PPI Processing Pipeline Includes instructions for cluster processing to run SPM’s PPI with a user specified ROI, and then single subject analysis incorporating the PPI variables.

Toolbox

• wfuPickAtlas
• Art and ArtRepair
• Results Reports
• SPM Display